We provide software tools for displaying and publishing interactive 3-dimensional (3D) and 4-dimensional (4D) figures to html webpages, with examples of high-resolution brain imaging. Our framework is based in the R statistical software using the rgl package, a 3D graphics library. We build on this package to allow manipulation of figures including rotation and translation, zooming, coloring of brain substructures, adjusting transparency levels, and addition/or removal of brain structures. The need for better visualization tools of ultra high dimensional data is ever present; we are providing a clean, simple, web-based option. We also provide a package (brainR) for users to readily implement these tools.
rgl, knitr, Sweave, slidify, misc3d, brainR
Graphics, Multivariate, MedicalImaging, ReproducibleResearch, SpatioTemporal
Text and figures are licensed under Creative Commons Attribution CC BY 4.0. The figures that have been reused from other sources don't fall under this license and can be recognized by a note in their caption: "Figure from ...".
For attribution, please cite this work as
Muschelli, et al., "brainR: Interactive 3 and 4D Images of High Resolution Neuroimage Data", The R Journal, 2014
BibTeX citation
@article{RJ-2014-004,
author = {Muschelli, John and Sweeney, Elizabeth and Crainiceanu, Ciprian},
title = {brainR: Interactive 3 and 4D Images of High Resolution Neuroimage Data},
journal = {The R Journal},
year = {2014},
note = {https://doi.org/10.32614/RJ-2014-004},
doi = {10.32614/RJ-2014-004},
volume = {6},
issue = {1},
issn = {2073-4859},
pages = {41-48}
}