The R Journal: article published in 2016, volume 8:2

QPot: An R Package for Stochastic Differential Equation Quasi-Potential Analysis
Christopher M. Moore, Christopher R. Stieha, Ben C. Nolting, Maria K. Cameron and Karen C. Abbott , The R Journal (2016) 8:2, pages 19-38.

Abstract QPot (pronounced kyoo + p ät) is an R package for analyzing two-dimensional systems of stochastic differential equations. It provides users with a wide range of tools to simulate, analyze, and visualize the dynamics of these systems. One of QPot’s key features is the computation of the quasi-potential, an important tool for studying stochastic systems. Quasi-potentials are particularly useful for comparing the relative stabilities of equilibria in systems with alternative stable states. This paper describes QPot’s primary functions, and explains how quasi-potentials can yield insights about the dynamics of stochastic systems. Three worked examples guide users through the application of QPot’s functions.

Received: 2015-10-22; online 2016-09-09
CRAN packages: QPot, rootSolve, deSolve, phaseR, Sim.DiffProc, yuima, viridis, plot3D, rgl , CRAN Task Views implied by cited CRAN packages: DifferentialEquations, TimeSeries, Finance, Graphics, Multivariate, Pharmacokinetics, SpatioTemporal


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@article{RJ-2016-031,
  author = {Christopher M. Moore and Christopher R. Stieha and Ben C.
          Nolting and Maria K. Cameron and Karen C. Abbott},
  title = {{QPot: An R Package for Stochastic Differential Equation
          Quasi-Potential Analysis}},
  year = {2016},
  journal = {{The R Journal}},
  url = {https://journal.r-project.org/archive/2016/RJ-2016-031/index.html},
  pages = {19--38},
  volume = {8},
  number = {2}
}