The ‘Changes on CRAN’ article from the 2010-2 issue.
Topic: Official Statistics & Survey Methodology. Maintainer: Matthias Templ. Packages: Amelia, EVER, Hmisc, MImix, RecordLinkage, SDaA, SeqKnn, StatMatch, TeachingSampling, VIM, cat, impute, ineq, laeken, lme4, memisc, mi, micEcon, mice, missMDA, mitools, mix, nlme, norm, odfWeave.survey, pan, pps, reweight, robCompositions, rrcovNA, sampfling, sampling, samplingbook, sdcMicro, sdcTable, simFrame, simPopulation, spsurvey, stratification, survey\(^*\), surveyNG, urn, x12, yaImpute.
Topic: Reproducible Research. Maintainer: Max Kuhn. Packages: Design\(^*\), Hmisc\(^*\), R.cache, R.rsp, R2HTML\(^*\), R2PPT, R2wd, SRPM, SweaveListingUtils, TeachingSampling, animation, apsrtable, ascii, brew, cacheSweave, cxxPack, exams, highlight, hwriter, memisc, odfWeave, odfWeave.survey, pgfSweave, quantreg, r2lh, reporttools, rms\(^*\), svSweave, tikzDevice, xtable\(^*\).
(* = core package)
Ratings, RxCEcolInf, SimpleTable, spikeslab.
OrgMassSpecR, plsRglm\(^*\), solaR.
DoseFinding, MCPMod.
mc2d, nacopula, truncnorm.
DSpat, SPACECAP, secr.
DoseFinding.
orderbook, rrv, schwartz97.
gcbd, magma, rpud.
Boruta, LiblineaR, LogicForest, LogicReg, RSNNS, SDDA, hda, quantregForest, rda, rgp, sda.
RNiftyReg\(^*\), dpmixsim\(^*\), mritc\(^*\).
Rcgmin, Rsolnp\(^*\), Rvmmin, minqa\(^*\), optimx\(^*\).
QuantPsyc, REQS, catR, equate, plsRglm.
CompRandFld, MarkedPointProcess, constrainedKriging, divagis, geosphere, raster\(^*\), sparr, sphet, vardiag.
aster, aster2, censReg, exactRankTests, glrt, saws, simexaft, spef, splinesurv, survPresmooth.
MARSS, TSAgg, mondate, pomp.
catnet.
(* = core package)
ACC & LMA Graph Plotting. Authors: Tal Carmi, Liat Gaziel.
Anderson-Moore Algorithm. Authors: Gary Anderson, Aneesh Raghunandan.
Computes all of a word’s possible spellings. Author: Antoine Tremblay, IWK Health Center.
Bayesian Model Averaging Library. Authors: Martin Feldkircher and Stefan Zeugner. In view: Bayesian.
Bayesian analysis of haplotype association using Markov Chain Monte Carlo. Authors: Raquel Iniesta and Victor Moreno.
Benchmark and frontier analysis using DEA and SFA (BeDS). Authors: Peter Bogetoft and Lars Otto.
Blaker’s binomial confidence limits. Author: J. Klaschka.
Compensatory Fuzzy Logic. Authors: Pablo Michel Marin Ortega, Kornelius Rohmeyer.
Association analysis of CNV data. Authors: Juan R González, Isaac Subirana.
COndition SpecIfic sub-NEtwork. Author: Haisu Ma.
Functions, data and code for count data. Author: Joseph M Hilbe.
Optimal distance-based clustering for one-dimensional data. Authors: Joe Song and Haizhou Wang.
Clustering of variables. Authors: Marie Chavent and Vanessa Kuentz and Benoit Liquet and Jerome Saracco.
Distribution function of quadratic forms in normal variables. Author: P. Lafaye de Micheaux.
Composite-likelihood based Analysis of Random Fields. Authors: Simone Padoan, Moreno Bevilacqua. In view: Spatial.
Differential Coexpression Analysis of Gene Expression Microarray Data. Authors: Bao-Hong Liu, Hui Yu.
DEComposition of Indirect and Direct Effects. Author: Christiana Kartsonaki.
Functions and data for “Data Mining with R”. Author: Luis Torgo.
Tools for analysing forensic genetic DNA data. Authors: Torben Tvedebrink and James Curran.
Additional dialogs and functions for Deducer. Author: Ian Fellows.
Reliability and factor analysis plugin. Authors: Alberto Mirisola and Ian Fellows.
Plot methods for computer experiments design and models. Authors: Yann Richet, Yves Deville, Clement Chevalier.
Easy Microarray data Analysis. Author: EMA group.
Normalize expression data using equivalently expressed genes. Authors: Li-Xuan Qin, Jaya M. Satagopan.
Functions and Datasets for “Forest Analytics with R”. Authors: Andrew Robinson and Jeff Hamann.
Scores features for Feature seLection. Author: Habil Zare.
FitARMA: Fit ARMA or ARIMA using fast MLE algorithm. Author: A.I. McLeod.
Generate images using Fourier descriptors. Author: John Myles White.
General ANOVA Design (GAD): Analysis of variance from general principles. Author: Leonardo Sandrini-Neto & Mauricio G. Camargo.
Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments. Authors: Sudeep Srivastava, Liang Chen.
Exact Hardy-Weinburg testing for Genome Wide Association Studies. Author: Ian Painter, GENEVA project, University of Washington.
High Dimensionnal Classification. Authors: R. Aidan, L. Berge, C. Bouveyron, S. Girard.
Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem. Author: Sergio Venturini.
Haplotype-based analysis of association for genetic traits. Authors: Sven Knueppel and Klaus Rohde.
Quality control and preprocessing of Illumina’s Infinium HumanMethylation27 BeadChip methylation assay. Author: F.M. Mancuso.
Incremental Mixture Importance Sampling. Authors: Adrian Raftery, Le Bao.
Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method. Author: Peng Ding.
Initiation à la Statistique avec R. Authors: Frederic Bertrand, Myriam Maumy-Bertrand.
An assortment of functions to facilitate modeling with linear mixed-effects regression (LMER). Author: Antoine Tremblay.
Local principal curve methods. Authors: Jochen Einbeck and Ludger Evers.
Lots of Superior Depictions. Authors: Bjoern Schwalb, Achim Tresch, Romain Francois.
Learning Vector Quantization Tools. Author: Sander Kelders.
Logic Forest. Author: Bethany Wolf. In view: MachineLearning.
Multivariate Autoregressive State-Space Modeling. Authors: Eli Holmes, Eric Ward, and Kellie Wills, NOAA, Seattle, USA. In view: TimeSeries.
Simultaneous Estimation of the Regression Coefficients and Precision Matrix. Authors: T. Tony Cai, Hongzhe Li, Weidong Liu and Jichun Xie.
Datasets from “Modern Multivariate Statistical Techniques” by Alan Julian Izenman. Author: Keith Halbert.
Multi-objective optimization for collecting cluster alternatives. Author: Johann Kraus.
The MSToolkit library for clinical trial design. Authors: Mango Solutions & Pfizer.
Modelling with Sparse And Dense Matrices. Authors: Douglas Bates and Martin Maechler.
MeDiChI ChIP-chip deconvolution library. Author: David J Reiss.
Probabilistic latent variable models for metabolomic data. Authors: Nyamundanda Gift, Isobel Claire Gormley and Lorraine Brennan.
Hierarchical Modal Clustering. Authors: Surajit Ray and Yansong Cheng.
Visualizes the scoring and binning of microsatellite fragment sizes. Author: Filipe Alberto.
Navigate and annotate genes and SNPs. Author: Scott Melville.
Clustering for networks. Authors: Mike Nowak, Solomon Messing, Sean J Westwood, and Dan McFarland.
Network Data for McFarland’s SNA R labs. Authors: Mike Nowak, Sean J Westwood, Solomon Messing, and Dan McFarland.
Statistical inference on populations of weighted or unweighted networks. Author: Cedric E Ginestet.
Estimate parent distributions with data of several order statistics. Author: Cheng Chou.
Ordered Subset Analysis for Case-Control Studies. Authors: Xuejun Qin, Elizabeth R. Hauser, Silke Schmidt (Center for Human Genetics, Duke University).
Organic Mass Spectrometry. Authors: Nathan G. Dodder, Southern California Coastal Water Research Project (SCCWRP). Contributions from Katharine M. Mullen. In view: ChemPhys.
Regression Functions and Datasets. Author: Peter Rossi.
A reporting pipeline for checking population pharmacokinetic model assumption. Author: Xiaoyong Sun.
Permutational algorithm to simulate survival data. Authors: Marie-Pierre Sylvestre, Thad Edens, Todd MacKenzie, Michal Abrahamowicz.
Process Physical Activity Accelerometer Data. Authors: Leena Choi, Zhouwen Liu, Charles E. Matthews, and Maciej S. Buchowski.
Polynomial (ordinary differential equation) Model Search. Authors: Mangiarotti S., Coudret R., Drapeau L.
Automates the creation of new statistical analysis projects. Author: John Myles White.
Quantitative Structure Activity Relationship (QSAR) Data Sets. Author: Max Kuhn.
Quantitative Analysis of Complex Networks. Author: Laurin Mueller.
4dfp MRI Image Read and Write Routines. Author: Kevin P. Barry with contributions from Avi Z. Snyder.
Continuous and discrete ancestral character reconstruction and evolutionary rate tests. Authors: J. Conrad Stack, Brian O’Meara, Luke Harmon.
Regularized Generalized Canonical Correlation Analysis. Author: Arthur Tenenhaus.
Data frame editor and dialog making wrapper for RGtk2. Authors: Tom Taverner, with contributions from John Verzani and Iago Conde.
Serialize R objects to JSON, JavaScript Object Notation. Author: Duncan Temple Lang.
Functions for fitting Markov models. Author: Scott D. Foster.
The java ncbi interface to R. Author: Martin Schumann.
Axis2 libraries for use in the R environment. Author: Martin Schumann.
EUtils libraries for use in the R environment. Author: Martin Schumann.
Medical image registration using the NiftyReg library. Authors: Jon Clayden; based on original code by Marc Modat and Pankaj Daga. In view: MedicalImaging.
Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS). Author: Christoph Bergmeir. In view: MachineLearning.
Search with Yahoo Japan. Author: Yohei Sato.
An R interface toWebMA of Yahoo Japan. Author: Yohei Sato.
R/Weka interface jars. Author: Kurt Hornik.
Authors: Rory Michelland, Genevieve Grundmann.
Tools for sampling in European Health Examination Surveys (EHES). Author: Statistics Norway.
Graphical User Interface for SensoMineR. Authors: F. Husson, J. Josse, S. Le.
Rcommander plugin for tm package. Author: Dzemil Lusija.
Rcpp integration for GNU GSL vectors and matrices. Authors: Romain Francois and Dirk Eddelbuettel.
Convert Rd to roxygen documentation. Authors: Hadley Wickham and Yihui Xie.
Record Values and Record Times. Author: Magdalena Chrapek.
Renewal method for extreme values extrapolation. Authors: Yves Deville, IRSN.
Rank Estimation for Linear Models. Author: John Kloke.
Matrix population models. Author: Marcelino de la Cruz.
Convert R objects to Java variables and XML. Author: Mehmet Hakan Satman.
A GUI for the UNU.RAN random variate generators. Author: Josef Leydold.
Statistical Analysis of Point Processes. Author: The Institute of Statistical Mathematics.
Standard errors of estimated genetic parametes. Author: Piter Bijma.
Calculate ANSI S3.5-1997 Speech Intelligibility Index. Author: Gregory R. Warnes.
Smoothed minimax concave penalization (SMCP) method for genome-wide association studies. Author: Jin (Gordon) Liu.
Sequential Parameter Optimization. Authors: T. Bartz-Beielstein with contributions from J. Ziegenhirt, W. Konen, O. Flasch, P. Koch, M. Zaefferer.
Squared extrapolation methods for accelerating fixed-point iterations. Author: Ravi Varadhan.
Server Side Scripting with R. Author: Mehmet Hakan Satman.
A framework for comparing the performance of MCMC samplers. Author: Madeleine Thompson.
SlimPLS multivariate feature selection. Author: Michael Gutkin.
Turns a data frame into an HTML file containing a sortable table. Author: John Myles White.
Target Equavelence Range Design. Author: M. Suzette Blanchard.
General discrete triangular distribution. Authors: Tristan Senga Kiessé, Francial G. Libengué, Silvio S. Zocchi, Célestin C. Kokonendji.
Time series Aggregation. Author: JS Lessels. In view: TimeSeries.
ML Estimator for Baseline-Placebo-Treatment (Three-group) designs. Author: Holger L. Kern.
This package performs various analyses of functional gene tiling DNA microarrays for studying complex microbial communities. Author: Ian Marshall.
Estimating diversification rate changes in phylogenies. Author: Tanja Stadler.
Multi-objective parameter tuning for classifiers. Authors: Christoph Muessel, Hans Kestler.
Vector analysis using graphical and analytical methods in 2D. Authors: Juan Carlos Ruiz Cuetos, Maria Eugenia Polo Garcia, Pablo Garcia Rodriguez.
Vector analysis using graphical and analytical methods in 3D. Authors: Juan Carlos Ruiz Cuetos, Maria Eugenia Polo Garcia, Pablo Garcia Rodriguez.
Search and download data from the World Bank’s World Development Indicators. Author: Vincent Arel-Bundock.
Weighted Gene Co-Expression Network Analysis. Authors: Peter Langfelder and Steve Horvath with contributions by Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang.
Exact calculation of WMTR. Author: Pavel Bazovkin.
Functions to perform Approximate Bayesian Computation (ABC) using simulated data. Authors: Katalin Csillery, with contributions from Michael Blum and Olivier Francois.
Tau-leaping stochastic simulation. Author: Philip Johnson.
Constrained nonlinear optimization. Author: Ravi Varadhan (with contributions from Gabor Grothendieck).
Automated Large Linear Analysis Node. Author: Alan Lee.
Andrews curves. Author: Jaroslav Myslivec.
Assessment ratio analysis. Author: Daniel McMillen.
Environment air pollution epidemiology: a library for time series analysis. Authors: Washington Junger and Antonio Ponce de Leon.
Aster Models. Author: Charles J. Geyer. In view: Survival.
Graphical User Interface for bayesTFR. Author: Hana Sevcikova.
Bayesian Fertility Projection. Authors: Hana Sevcikova, Leontine Alkema, Adrian Raftery.
Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error. Authors: Han Lin Shang and Xibin Zhang.
Analysis of Illumina BeadArray SNP data including MSV markers. Author: Lars Gidskehaug.
The bee swarm plot, an alternative to stripchart. Author: Aron Charles Eklund.
Contains basic functions to manipulate belief functions and associated mass assignments. Authors: N. Maillet, B. Charnomordic, S. Destercke.
Benchmark Experiments Toolbox. Author: Manuel J. A. Eugster.
Batch Effects Removal. Author: Marco Giordan.
Bayesian Fractional Polynomials. Author: Daniel Sabanes Bove.
BInary Longitudinal Data. Authors: M. Helena Gonçalves, M. Salomé Cabral and Adelchi Azzalini; incorporates Fortran-77 code written by R. Piessens and E. de Doncker in ‘Quadpack’.
Bayesian Isotonic Regression with Bernstein Polynomials.
Sample size calculations for bivariate longitudinal data. Authors: W. Scott Comulada and Robert E. Weiss.
cMonkey intgrated biclustering algorithm. Authors: David J Reiss, Institute for Systems Biology.
CAR Estimation, Variable Selection, and Regression. Authors: Verena Zuber and Korbinian Strimmer.
Clustered and sparse regression (CaSpaR). Author: Daniel Percival.
Procedures to generate IRT adaptive tests (CAT). Authors: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada). In view: Psychometrics.
Class Cover Catch Digraphs. Author: David J. Marchette.
Censored Regression (Tobit) Models. Author: Arne Henningsen. In view: Survival.
R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS). Author: Anders Jacobsen.
Converts listwise icd9 data into comorbidity count and Charlson Index. Author: Vanessa Cox.
Multiple testing methods for exploratory research. Author: Jelle Goeman.
Significant Cluster Analysis. Authors: Douglas Whitaker and Mary Christman.
Tests for column correlation in the presence of row correlation. Author: Omkar Muralidharan.
Descriptives by groups. Authors: Héctor Sanz, Isaac Subirana, Joan Vila.
Constrained, covariance-matching constrained and universal point or block kriging. Author: Christoph Hofer. In view: Spatial.
CorrSieve. Author: Michael G. Campana.
Time series costationarity determination and tests of stationarity. Authors: Guy Nason and Alessandro Cardinali.
The cross-match test. Authors: Ruth Heller, Dylan Small, Paul Rosenbaum.
Data sets for the examples used in the package cudaBayesreg. Author: Adelino Ferreira da Silva.
Change point detection in genomic sequences. Author: Vito M.R. Muggeo.
curvHDR filtering. Authors: George Luta, Ulrike Naumann and Matt Wand.
R/C++ Tools for Literate Statistical Practice. Author: Dominick Samperi. In view: ReproducibleResearch.
Data analysis for forensic scientists. Authors: James Curran, Danny Chang.
Conventional Cross-validation statistics for climate-growth model. Author: Zongshan Li with contributions from Jinlong Zhang.
Dynamical Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data. Author: Christian Bender.
delftfews R extensions. Authors: Mario Frasca, Michèl van Leeuwen.
Forecasting mortality, fertility, migration and population data. Authors: Rob J Hyndman with contributions from Heather Booth, Leonie Tickle and John Maindonald.
Dictionaries for reading survey microdata from IBGE. Authors: Erick Fonseca, Alexandre Rademaker.
Direct labels for plots. Author: Toby Dylan Hocking.
Data preprocessing, discretization for classification. Authors: Kim, H. J.
Species distribution modeling. Authors: Robert Hijmans, Steven Phillips, John Leathwick and Jane Elith.
Distance Between Phylogenetic Histories. Authors: John Chakerian and Susan Holmes.
Find the divisors of a number. Author: Greg Hirson.
Nearest Neighbour Contingency Table Analysis. Authors: Marcelino de la Cruz Rot and Philip M. Dixon.
Dynamic Path Approach. Author: Emile Chappin.
A powerful tool to compare lists and draw Venn diagrams. Author: Nicolas Cagnard.
Ecological regression using aggregate and individual data. Author: Christopher Jackson.
EGARCH simulation and fitting. Author: Kerstin Konnerth.
Exponentially Modified Gaussian (EMG) Distribution. Author: Shawn Garbett.
Parsing and evaluation tools that provide more details than the default. Author: Hadley Wickham.
Matrix exponential. Authors: Vincent Goulet, Christophe Dutang, Martin Maechler, David Firth, Marina Shapira, Michael Stadelmann.
Nonparametric Analysis of Covariance. Author: Xiao-Feng Wang.
Bayesian quantile regression factor models. Author: Lane Burgette.
Data sets and utilities for Foundations and Applications of Statistics by R Pruim. Author: Randall Pruim.
Functions for medical statistics book with some demographic data. Author: Minato Nakazawa.
A framework for working in a functional programming paradigm in R. Author: Brian Lee Yung Rowe.
Forward search for Mokken scale analysis. Author: Wobbe P. Zijlstra.
A graphical approach to sequentially rejective multiple test procedures. Author: Kornelius Rohmeyer.
Genetic algorithms and C-steps based LTS estimation. Author: Mehmet Hakan Satman.
Statistical Estimation of Game-Theoretic Models. Authors: Curtis S. Signorino and Brenton Kenkel.
Difference measures for multivariate Gaussian probability density functions. Author: Henning Rust.
GPU/CPU Benchmarking in Debian-based systems. Author: Dirk Eddelbuettel. In view: HighPerformanceComputing.
Genetic Epidemiology Design and Inference. Author: Venkatraman E. Seshan.
Spatial prediction for function value data. Authors: Ramon Giraldo, Pedro Delicado, Jorge Mateu.
Fit a penalized continuation ratio model for predicting an ordinal response. Author: Kellie J. Archer.
Generalized Logrank Tests for Interval-censored Failure Time Data. Authors: Qiang Zhao and Jianguo Sun. In view: Survival.
Using the Google Visualisation API with R. Authors: Markus Gesmann, Diego de Castillo.
Gaussian Processes Tool-Kit. Authors: Alfredo A. Kalaitzis, Pei Gao, Antti Honkela, Neil D. Lawrence.
functions in Grid graphics. Author: Baptiste Auguie.
General Recognition Theory. Authors: The original Matlab toolbox by Leola A. Alfonso-Reese. R port, with several significant modifications by Kazunaga Matsuki.
Generalised Shape Constraints. Author: Charlotte Maia.
Help for R. Authors: Hadley Wickham and Barret Schloerke.
Hierarchical Semiparametric Regression of Test Statistics. Authors: Long Qu, Dan Nettleton, Jack Dekkers.
Hot spots. Author: Anthony Darrouzet-Nardi.
High-dimensional Undirected Graph Estimation. Authors: Tuo Zhao, Han Liu, Kathryn Roeder, John Lafferty, Larry Wasserman.
Goodness-of-fit functions for comparison of simulated and observed hydrological time series. Author: Mauricio Zambrano Bigiarini.
Time series management, analysis and interpolation for hydrological modelling. Author: Mauricio Zambrano-Bigiarini.
Independent Components Analysis (ICA) based eye-movement correction. Authors: Antoine Tremblay, IWK Health Center.
Convert iGraph graps to SoNIA .son files. Author: Sean J Westwood.
Share plots using the image hosting service imgur.com. Author: Aaron Statham.
Functions to assess the strength and significance of relationship of species site group associations. Authors: Miquel De Caceres, Florian Jansen.
Functions to extract inferential values of a fitted model object. Author: Vinh Nguyen.
An R wrapper for the infochimps.com API services. Author: Drew Conway.
toggle R interactive mode. Authors: Jeffrey Horner, Jeroen Ooms.
Individual patient and Mixed-level Meta-analysis of Time-to-Event Outcomes. Author: S. Kovalchik.
Provides data sets for “Introduction to Statistical Data Analysis for the Life Sciences”. Authors: Claus Ekstrom and Helle Sorensen.
Independent Surrogate Variable Analysis. Author: Andrew E Teschendorff.
Information Visualisation with UML and Graphs. Author: Charlotte Maia.
Axis Labeling. Author: Justin Talbot.
Laeken indicators for measuring social cohesion. Authors: Andreas Alfons, Josef Holzer and Matthias Templ. In view: OfficialStatistics.
Radiometric and topographic correction of satellite imagery. Author: Sarah Goslee.
Less Code, More Results. Authors: David W. Gerbing, School of Business Administration, Portland State University.
Multivariate Statistical Analysis for the Item Count Technique. Authors: Graeme Blair, Kosuke Imai.
A simple logging system for R, based on log4j. Author: John Myles White.
Sample size calculations for longitudinal data. Authors: Michael C. Donohue, Anthony C. Gamst, Steven D. Edland.
Make dealing with dates a little easier. Authors: Garrett Grolemund, Hadley Wickham.
Matrix Algebra on GPU and Multicore Architectures. Author: Brian J Smith. In view: HighPerformanceComputing.
Literate Programming with Make and Sweave. Author: Charlotte Maia.
Conditional Samplings for Max-Linear Models. Author: Yizao Wang.
Create Plots from MCMC Output. Author: S. McKay Curtis.
Multiple Contrast Profiles. Author: Daniel Gerhard.
Moving Epidemics Method R Package. Author: Jose E. Lozano Alonso.
Memoise functions. Author: Hadley Wickham.
Fit and test metaregression models. Author: Hilde M. Huizenga & Ingmar Visser.
Minimal Free Resolutions of Graph Edge Ideals. Author: David J. Marchette.
Estimation of models with limited dependent variables. Authors: Fabrizio Carlevaro, Yves Croissant, Stephane Hoareau.
Estimator with Qudratics Forms in Mixeds Models. Authors: Jean-Benoist Leger, ENS Cachan & Jean-Benoist Leger, INRA.
Forensic Genetics DNA Mixture Separation. Author: Torben Tvedebrink.
Fitting finite mixture of scale mixture of skew-normal distributions. Authors: Marcos Prates, Victor Lachos and Celso Cabral.
Efficient multi-level k-circulant supersaturated designs. Author: B N Mandal.
Modeling physical computer codes with functional outputs using clustering and dimensionality reduction. Author: Benjamin Auder.
Model-free estimation of a psychometric function. Authors: Ivan Marin-Franch, Kamila Zychaluk, and David H. Foster.
Keep track of dates in terms of months. Author: Dan Murphy. In view: TimeSeries.
Multivariate Partial Mantel Correlogram. Author: Marcelino de la Cruz.
Multinomial Processing Tree (MPT) Models. Author: Florian Wickelmaier.
Marginal regresson models for dependent data. Authors: Guido Masarotto and Cristiano Varin.
MRI tissue classification. Authors: Dai Feng and Luke Tierney. In view: MedicalImaging.
Multivariate time series data imputation. Authors: Washington Junger and Antonio Ponce de Leon.
Multitaper Spectral Analysis. Author: Karim Rahim.
Unified multiple testing procedures. Authors: MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten Dickhaus, Niklas Hack, Frank Konietschke, Kornelius Rohmeyer, Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft.
A graphical user interface for the MuToss Project. Authors: MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten Dickhaus, Niklas Hack, Frank Konietschke, Kornelius Rohmeyer, Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft.
Nested Archimedean Copulas. Authors: Marius Hofert and Martin Maechler. In view: Distributions.
Functions to generate fMRI data including activated data, noise data and resting state data. Authors: Marijke Welvaert with contributions from Joke Durnez, Beatrijs Moerkerke, Yves Rosseel and Geert Verdoolaege.
Nearest Neighbor Autocovariates. Authors: A. I. McLeod and M. S. Islam.
Improved RDA Using nnc. Authors: M. S. Islam and A. I. McLeod.
Normality and White Noise Testing. Author: Peter Wickham.
A generalization of the nonparametric seasonality tests of Hewitt et al. (1971) and Rogerson (1996). Author: Roland Rau.
Tools for the analysis of air pollution data. Authors: David Carslaw and Karl Ropkins.
Utilities for working with R’s operators. Author: Christopher Brown.
A replacement and extension of the optim() function. Authors: John C Nash and Ravi Varadhan. In view: Optimization.
Order Restricted Assessment Of Microarray Titration Experiments. Author: Florian Klinglmueller.
Orderbook visualization/Charting software. Authors: Andrew Liu, Khanh Nguyen, Dave Kane. In view: Finance.
Parallelized functions for palaeoecological and palaeogeographical analysis. Author: Matthew Vavrek.
Partition Maps. Author: Nicolai Meinshausen.
Classification using biological pathways as prior knowledge. Author: Marc Johannes.
Segmentation Trees in Partial Least Squares Path Modeling. Authors: Gaston Sanchez, and Tomas Aluja.
Adding Progress Bar to ‘*apply’ Functions. Author: Peter Solymos.
Moderated regression package. Author: Alberto Mirisola & Luciano Seta.
Analysis of single serving and composite pesticide residue measurements. Author: David M Diez.
Paired Functional Data Analysis. Author: Andrew Redd.
panel generalized linear model. Author: Yves Croissant.
Pretty Heatmaps. Author: Raivo Kolde.
Nonparametric goodness-of-fit methods based on phi-divergences. Author: Leah R. Jager.
Basic functions for phylogenetic analysis. Author: Liang Liu. In view: Phylogenetics.
R packge for simulating biological sequence evolution. Authors: Botond Sipos, Gregory Jordan.
Phylogenetic tools for ecologists. Authors: Jinlong Zhang, Xiangcheng Mi, Nancai Pei.
Estimating the proportion of true null hypotheses for FDR. Authors: Long Qu, Dan Nettleton, Jack Dekkers.
Plot HTML output with Google Maps API and your own data. Author: Milan Kilibarda.
Partial least squares Regression for generalized linear models. Authors: Frederic Bertrand, Nicolas Meyer, Myriam Maumy-Bertrand. In views: ChemPhys, Psychometrics.
Probability Models for Ranking Data. Authors: Paul H. Lee and Philip L. H. Yu.
Tools for Polyploid Microsatellite Analysis. Author: Lindsay V. Clark.
Portmanteau Tests for ARMA, VARMA, ARCH, and FGN Models. Author: Esam Mahdi & A. Ian McLeod.
Point Process Statistics. Author: Niels Richard Hansen.
Process Data. Author: Niels Richard Hansen.
Particle Swarm Optimization. Author: Claus Bendtsen.
Point-In-Polyhedron Test (3D). Authors: Jose M. Maisog, Yuan Wang, George Luta, Jianfei Liu.
P-values for Classification. Authors: Niki Zumbrunnen, Lutz Duembgen.
Statistical Methods for Quality Science. Author: Thomas Roth.
Parameter estimation for the Averaging model of Information Integration Theory. Authors: Giulio Vidotto, Stefano Noventa, Davide Massidda, Marco Vicentini.
R Bindings for the Discourse Network Analyzer. Author: Philip Leifeld.
R interface to Python via Jython. Authors: G. Grothendieck and Carlos J. Gil Bellosta (authors of Jython itself are Jim Hugunin, Barry Warsaw, Samuele Pedroni, Brian Zimmer, Frank Wierzbicki and others; Bob Ippolito is the author of the simplejson Python module).
Time-of-flight mass spectra signal processing. Authors: Dariya Malyarenko, Maureen Tracy and William Cooke.
Regression with Functional Data. Authors: Philip Reiss and Lei Huang.
Relational Event Models. Author: Carter T. Butts.
A general message and error reporting system. Author: Jon Clayden.
Flexibly reshape data: a reboot of the reshape package. Author: Hadley Wickham.
Calculate RMAC or FMAC agreement coefficients. Author: Jennifer Kirk.
R interface to PHAST software for comparative genomics. Authors: Melissa Hubisz, Katherine Pollard, and Adam Siepel.
R functions for computation on GPU. Author: Chi Yau. In view: HighPerformanceComputing.
Scalable Robust Estimators with High Breakdown Point for Incomplete Data. Author: Valentin Todorov. In view: OfficialStatistics.
Estimation of Proportion of GM Stacked Seeds in Seed Lots. Authors: Kevin Wright, Jean-Louis Laffont.
Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators. Authors: Josef Leydold and Sougata Chaudhuri.
Functions for reading and displaying satellite data for oceanographic applications with R. Authors: Héctor Villalobos and Eduardo González-Rodríguez.
A package on the Schwartz two-factor commodity model. Authors: Philipp Erb, David Luethi, Juri Hinz, Simon Otziger. In view: Finance.
Graphical user interface for package sdcMicro. Author: Matthias Templ.
Estimation weight functions in meta analysis. Author: Kaspar Rufibach.
CN Profiling using Sequencing and CBS. Authors: Jeremy J. Shen, Nancy R. Zhang.
Simulation and visualization of restriction enzyme cutting pattern from DNA sequences. Authors: Qiong Ding, Jinlong Zhang.
Models and Data Sets for the Study of Species-Area Relationships. Author: Peter Solymos.
Statistical Significance of Clustering. Authors: Hanwen Huang, Yufeng Liu & J. S. Marron.
Authors: Juan Xiong, Wenqing He, Grace Y. Yi. In view: Survival.
A simple web app framework for R, based on sinatra. Author: Hadley Wickham.
Provides two taxonomic coefficients from E. S. Smirnov “Taxonomic analysis” (1969) book. Author: Alexey Shipunov (with help of Eugenij Altshuler).
Smoothed M-estimators for 1-dimensional location. Author: Christian Hennig.
Soil spectral data exploration and regression functions. Author: Thomas Terhoeven-Urselmans.
Functions for soil texture plot, classification and transformation. Authors: Julien MOEYS, contributions from Wei Shangguan.
Functions for Multiplicty Correction and Multiple Testing. Author: Livio Finos.
classes and methods for spatio-temporal data. Author: Edzer Pebesma.
Nonparametric bayesian survival analysis. Authors: Emmanuel Sharef, Robert L. Strawderman, and David Ruppert. In view: Survival.
Simple Parallel R INTerface. Author: University of Edinburgh SPRINT Team.
Survival prediction by joint analysis of microarray gene expression data. Author: Haleh Yasrebi.
Author: Haleh Yasrebi.
Boost mutex functionality for R. Author: Michael J. Kane.
Represents tables as semi-graphic displays. Authors: Ernest Kwan and Michael Friendly.
Forensic Glass Transfer Probabilities. Authors: James Curran and TingYu Huang.
Genetic Rare Variants Tests. Author: Thomas Hoffmann.
Design and analysis of two-phase sampling and case-control studies. Authors: Takumi Saegusa, Sebastien Haneuse, Nilanjan Chaterjee, Norman Breslow.
Treemap visualization. Author: Martijn Tennekes.
Triad census for networks. Authors: Solomon Messing, Sean J Westwood, Mike Nowak and Dan McFarland.
External and Internal Validation Indices. Author: Marcus Scherl.
Combination of violin plot with mean and standard deviation. Author: Raphael W. Majeed.
Weighted SVM with boosting algorithm for improving accuracy. Authors: SungHwan Kim and Soo-Heang Eo.
A Hydraulics Package to Compute Open-Channel Flow over Weirs. Author: William Asquith.
R Tools for Wildlife Research and Management. Authors: Glen A. Sargeant, USGS Northern Prairie Wildlife Research Center.
Weighted violin plot. Author: Solomon Messing.
Xpose 4. Authors: E. Niclas Jonsson, Andrew Hooker and Mats Karlsson.
Xpose 4 Classic Menu System. Authors: E. Niclas Jonsson, Andrew Hooker and Mats Karlsson.
Xpose 4 Data Functions Package. Authors: E. Niclas Jonsson, Andrew Hooker and Mats Karlsson.
Xpose 4 Generic Functions Package. Authors: E. Niclas Jonsson, Andrew Hooker and Mats Karlsson.
Xpose 4 Specific Functions Package. Authors: E. Niclas Jonsson, Andrew Hooker and Mats Karlsson.
The following packages were moved to the Archive: AIS, BayesPanel, BootCL, DEA, FKBL, GRASS, MSVAR, NADA, PhySim, RGtk2DfEdit, Rfwdmv, Rlsf, SNPMaP, SharedHT2, TwslmSpikeWeight, VDCutil, VaR, XReg, aaMI, asuR, bayesCGH, bicreduc, bim, birch, celsius, csampling, cts, demogR, dprep, glmc, grasp, grnnR, ifa, ig, inetwork, ipptoolbox, knnTree, lnMLE, locfdr, logilasso, lvplot, marg, mlCopulaSelection, mmlcr, netmodels, normwn.test, npde, nytR, ofw, oosp, pga, pinktoe, ppc, qgen, risksetROC, rjacobi, rv, sabreR, singlecase, smd.and.more, stochasticGEM, titecrm, and udunits.
The following packages were resurrected from the Archive: MIfuns, agsemisc, assist, gllm, mlmmm, mvgraph, nlts, rgr, and supclust.
The following packages were removed from CRAN: seaflow and simpleR.
This article is converted from a Legacy LaTeX article using the texor package. The pdf version is the official version. To report a problem with the html, refer to CONTRIBUTE on the R Journal homepage.
Text and figures are licensed under Creative Commons Attribution CC BY 4.0. The figures that have been reused from other sources don't fall under this license and can be recognized by a note in their caption: "Figure from ...".
For attribution, please cite this work as
Hornik & Zeileis, "Changes on CRAN", The R Journal, 2010
BibTeX citation
@article{RJ-2010-2-cran,
author = {Hornik, Kurt and Zeileis, Achim},
title = {Changes on CRAN},
journal = {The R Journal},
year = {2010},
note = {https://rjournal.github.io/},
volume = {2},
issue = {2},
issn = {2073-4859},
pages = {90-100}
}