Articles published in the December 2006 issue of R News
Editorial
Wolfgang Huber and Paul Murrell 1
Graphs and networks: Tools in Bioconductor
Li Long and Vince Carey 2
Modeling package dependencies using graphs
Seth Falcon 8
Image analysis for microscopy screens
Oleg Sklyar and Wolfgang Huber 12
Beadarray: An R package to analyse Illumina BeadArrays
Mark Dunning, Mike Smith, Natalie Thorne and Simon Tavaré 17
Transcript mapping with high-density tiling arrays
Matthew Ritchie and Wolfgang Huber 23
Analyzing flow cytometry data with Bioconductor
Nolwenn Le Meur and Florian Hahne 27
Protein complex membership estimation using apComplex
Denise Scholtens 32
SNP metadata access and use with Bioconductor
Vince Carey 36
Integrating biological data resources into R with biomaRt
Steffen Durinck 40
Identifying interesting genes with siggenes
Holger Schwender, Andreas Krause and Katja Ickstadt 45
Reverse engineering genetic networks using the GeneNet package
Juliane Schäfer, Rainer Opgen-Rhein and Korbinian Strimmer 50
A multivariate approach to integrating datasets using made4 and ade4
Aedín C. Culhane and Jean Thioulouse 54
Using amap and ctc packages for huge clustering
Antoine Lucas and Sylvain Jasson 58
Model-based microarray image analysis
Chris Fraley and Adrian E. Raftery 60
Sample size estimation for microarray experiments using the ssize package
Gregory R. Warnes 64