Bibtex for 2017/1

Roger Bivand. Editorial. The R Journal, 9(1):4-5, June 2017.

@Article{editorial:2017,
  author       = {Roger Bivand}, 
  title        = {Editorial}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {4--5},
  month        = jun,
  url          = {http://journal.r-project.org/archive/2017-1/editorial.pdf}
}

Taylor Arnold, Michael J. Kane, Simon Urbanek. iotools: High-Performance I/O Tools for R. The R Journal, 9(1):6-13, June 2017.

@Article{RJ-2017-001:2017,
  author       = {Taylor Arnold and Michael J. Kane and Simon Urbanek}, 
  title        = {iotools: High-Performance I/O Tools for R}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {6--13},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-001}
}

Martin Otava, Rudradev Sengupta, Ziv Shkedy, Dan Lin, Setia Pramana, Tobias Verbeke, Philippe Haldermans, Ludwig A. Hothorn, Daniel Gerhard, Rebecca M. Kuiper, Florian Klinglmueller, Adetayo Kasim. IsoGeneGUI: Multiple Approaches for Dose-Response Analysis of Microarray Data Using R. The R Journal, 9(1):14-26, June 2017.

@Article{RJ-2017-002:2017,
  author       = {Martin Otava and Rudradev Sengupta and Ziv Shkedy and
          Dan Lin and Setia Pramana and Tobias Verbeke and Philippe
          Haldermans and Ludwig A. Hothorn and Daniel Gerhard and
          Rebecca M. Kuiper and Florian Klinglmueller and Adetayo
          Kasim}, 
  title        = {IsoGeneGUI: Multiple Approaches for Dose-Response Analysis
          of Microarray Data Using R}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {14--26},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-002}
}

Sam Tyner, François Briatte, Heike Hofmann. Network Visualization with ggplot2. The R Journal, 9(1):27-59, June 2017.

@Article{RJ-2017-023:2017,
  author       = {Sam Tyner and François Briatte and Heike Hofmann}, 
  title        = {Network Visualization with ggplot2}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {27--59},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-023}
}

Mark Pickup, Paul Gustafson, Davor Cubranic, Geoffrey Evans. OrthoPanels: An R Package for Estimating a Dynamic Panel Model with Fixed Effects Using the Orthogonal Reparameterization Approach. The R Journal, 9(1):60-76, June 2017.

@Article{RJ-2017-003:2017,
  author       = {Mark Pickup and Paul Gustafson and Davor Cubranic and
          Geoffrey Evans}, 
  title        = {OrthoPanels: An R Package for Estimating a Dynamic
          Panel Model with Fixed Effects Using the Orthogonal
          Reparameterization Approach}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {60--76},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-003}
}

Randall Pruim, Daniel T Kaplan, Nicholas J Horton. The mosaic Package: Helping Students to Think with Data Using R. The R Journal, 9(1):77-102, June 2017.

@Article{RJ-2017-024:2017,
  author       = {Randall Pruim and Daniel T Kaplan and Nicholas J Horton}, 
  title        = {The mosaic Package: Helping Students to `Think with Data'
          Using R}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {77--102},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-024}
}

Jakob Bossek. smoof: Single- and Multi-Objective Optimization Test Functions. The R Journal, 9(1):103-113, June 2017.

@Article{RJ-2017-004:2017,
  author       = {Jakob Bossek}, 
  title        = {smoof: Single- and Multi-Objective Optimization Test
          Functions}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {103--113},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-004}
}

Daniel Osorio, Janneth González, Andrés Pinzón. minval: An R package for MINimal VALidation of Stoichiometric Reactions. The R Journal, 9(1):114-123, June 2017.

@Article{RJ-2017-031:2017,
  author       = {Daniel Osorio and Janneth González and Andrés Pinzón}, 
  title        = {minval: An R package for MINimal VALidation of
          Stoichiometric Reactions}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {114--123},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-031}
}

G. Brooke Anderson, Colin Eason, Elizabeth A. Barnes. Working with Daily Climate Model Output Data in R and the futureheatwaves Package. The R Journal, 9(1):124-137, June 2017.

@Article{RJ-2017-032:2017,
  author       = {G. Brooke Anderson and Colin Eason and Elizabeth A. Barnes}, 
  title        = {Working with Daily Climate Model Output Data in R and the
          futureheatwaves Package}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {124--137},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-032}
}

Sean S. Downey, Guowei Sun, Peter Norquest. alineR: an R Package for Optimizing Feature-Weighted Alignments and Linguistic Distances. The R Journal, 9(1):138-152, June 2017.

@Article{RJ-2017-005:2017,
  author       = {Sean S. Downey and Guowei Sun and Peter Norquest}, 
  title        = {alineR: an R Package for Optimizing Feature-Weighted
          Alignments and Linguistic Distances}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {138--152},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-005}
}

Jim Duggan. Implementing a Metapopulation Bass Diffusion Model using the R Package deSolve. The R Journal, 9(1):153-163, June 2017.

@Article{RJ-2017-006:2017,
  author       = {Jim Duggan}, 
  title        = {Implementing a Metapopulation Bass Diffusion Model using the
          R Package deSolve}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {153--163},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-006}
}

Christian Margreitter, Chris Oostenbrink. MDplot: Visualise Molecular Dynamics. The R Journal, 9(1):164-186, June 2017.

@Article{RJ-2017-007:2017,
  author       = {Christian Margreitter and Chris Oostenbrink}, 
  title        = {MDplot: Visualise Molecular Dynamics}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {164--186},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-007}
}

Luca Scrucca. On Some Extensions to GA Package: Hybrid Optimisation, Parallelisation and Islands EvolutionOn some extensions to GA package: hybrid optimisation, parallelisation and islands evolution. The R Journal, 9(1):187-206, June 2017.

@Article{RJ-2017-008:2017,
  author       = {Luca Scrucca}, 
  title        = {On Some Extensions to GA Package: Hybrid Optimisation,
          Parallelisation and Islands Evolution}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {187--206},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-008}
}

Steffen Moritz, Thomas Bartz-Beielstein. imputeTS: Time Series Missing Value Imputation in R. The R Journal, 9(1):207-218, June 2017.

@Article{RJ-2017-009:2017,
  author       = {Steffen Moritz and Thomas Bartz-Beielstein}, 
  title        = {imputeTS: Time Series Missing Value Imputation in R}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {207--218},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-009}
}

Pablo Morales, Julián Luengo, Luís P.F. Garcia, Ana C. Lorena, André C.P.L.F. de Carvalho, Francisco Herrera. The NoiseFiltersR Package: Label Noise Preprocessing in R. The R Journal, 9(1):219-228, June 2017.

@Article{RJ-2017-027:2017,
  author       = {Pablo Morales and Julián Luengo and Luís P.F. Garcia and
          Ana C. Lorena and André C.P.L.F. de Carvalho and Francisco
          Herrera}, 
  title        = {The NoiseFiltersR Package: Label Noise Preprocessing in R}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {219--228},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-027}
}

Razieh Nabi, Xiaogang Su. coxphMIC: An R Package for Sparse Estimation of Cox Proportional Hazards Models via Approximated Information Criteria. The R Journal, 9(1):229-238, June 2017.

@Article{RJ-2017-018:2017,
  author       = {Razieh Nabi and Xiaogang Su}, 
  title        = {coxphMIC: An R Package for Sparse Estimation of Cox
          Proportional Hazards Models via Approximated Information
          Criteria}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {229--238},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-018}
}

Simon H. Heisterkamp, Engelbertus van Willigen, Paul-Matthias Diderichsen, John Maringwa. Update of the nlme Package to Allow a Fixed Standard Deviation of the Residual Error. The R Journal, 9(1):239-251, June 2017.

@Article{RJ-2017-010:2017,
  author       = {Simon H. Heisterkamp and Engelbertus van Willigen and Paul-
          Matthias Diderichsen and John Maringwa}, 
  title        = {Update of the nlme Package to Allow a Fixed Standard
          Deviation of the Residual Error}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {239--251},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-010}
}

Hye-Min Choe, Mijeong Kim, Eun-Kyung Lee. EMSaov: An R Package for the Analysis of Variance with the Expected Mean Squares and its Shiny Application. The R Journal, 9(1):252-261, June 2017.

@Article{RJ-2017-011:2017,
  author       = {Hye-Min Choe and Mijeong Kim and Eun-Kyung Lee}, 
  title        = {EMSaov: An R Package for the Analysis of Variance with the
          Expected Mean Squares and its Shiny Application}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {252--261},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-011}
}

Mónica López-Ratón, Elisa M. Molanes-López, Emilio Letón, Carmen Cadarso-Suárez. GsymPoint: An R Package to Estimate the Generalized Symmetry Point, an Optimal Cut-off Point for Binary Classification in Continuous Diagnostic Tests. The R Journal, 9(1):262-283, June 2017.

@Article{RJ-2017-015:2017,
  author       = {Mónica López-Ratón and Elisa M. Molanes-López and Emilio
          Letón and Carmen Cadarso-Suárez}, 
  title        = {GsymPoint: An R Package to Estimate the Generalized Symmetry
          Point, an Optimal Cut-off Point for Binary Classification in
          Continuous Diagnostic Tests}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {262--283},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-015}
}

Joshua P. French. autoimage: Multiple Heat Maps for Projected Coordinates. The R Journal, 9(1):284-297, June 2017.

@Article{RJ-2017-025:2017,
  author       = {Joshua P. French}, 
  title        = {autoimage: Multiple Heat Maps for Projected Coordinates}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {284--297},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-025}
}

Thomas Wieland. Market Area Analysis for Retail and Service Locations with MCI. The R Journal, 9(1):298-323, June 2017.

@Article{RJ-2017-020:2017,
  author       = {Thomas Wieland}, 
  title        = {Market Area Analysis for Retail and Service Locations with
          MCI}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {298--323},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-020}
}

Neeraj Bokde, Gualberto Asencio-Cortés, Francisco Martínez-Álvarez, Kishore Kulat. PSF: Introduction to R Package for Pattern Sequence Based Forecasting Algorithm. The R Journal, 9(1):324-333, June 2017.

@Article{RJ-2017-021:2017,
  author       = {Neeraj Bokde and Gualberto Asencio-Cortés and Francisco
          Martínez-Álvarez and Kishore Kulat}, 
  title        = {PSF: Introduction to R Package for Pattern Sequence Based
          Forecasting Algorithm}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {324--333},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-021}
}

Adrien Mazoyer, Rémy Drouilhet, Stéphane Despréaux, Bernard Ycart. flan: An R Package for Inference on Mutation Models.. The R Journal, 9(1):334-351, June 2017.

@Article{RJ-2017-029:2017,
  author       = {Adrien Mazoyer and Rémy Drouilhet and Stéphane Despréaux and
          Bernard Ycart}, 
  title        = {flan: An R Package for Inference on Mutation Models.}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {334--351},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-029}
}

Philipp Probst, Quay Au, Giuseppe Casalicchio, Clemens Stachl, Bernd Bischl. Multilabel Classification with R Package mlr. The R Journal, 9(1):352-369, June 2017.

@Article{RJ-2017-012:2017,
  author       = {Philipp Probst and Quay Au and Giuseppe Casalicchio and
          Clemens Stachl and Bernd Bischl}, 
  title        = {Multilabel Classification with R Package mlr}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {352--369},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-012}
}

Mingli Chen, Victor Chernozhukov, Iván Fernández-Val, Blaise Melly. Counterfactual: An R Package for Counterfactual Analysis. The R Journal, 9(1):370-384, June 2017.

@Article{RJ-2017-033:2017,
  author       = {Mingli Chen and Victor Chernozhukov and Iván Fernández-Val
          and Blaise Melly}, 
  title        = {Counterfactual: An R Package for Counterfactual Analysis}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {370--384},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-033}
}

Leo Lahti, Janne Huovari, Markus Kainu, Przemysław Biecek. Retrieval and Analysis of Eurostat Open Data with the eurostat Package. The R Journal, 9(1):385-392, June 2017.

@Article{RJ-2017-019:2017,
  author       = {Leo Lahti and Janne Huovari and Markus Kainu and Przemysław
          Biecek}, 
  title        = {Retrieval and Analysis of Eurostat Open Data with the
          eurostat Package}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {385--392},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-019}
}

Gul Inan, Lan Wang. PGEE: An R Package for Analysis of Longitudinal Data with High-Dimensional Covariates. The R Journal, 9(1):393-402, June 2017.

@Article{RJ-2017-030:2017,
  author       = {Gul Inan and Lan Wang}, 
  title        = {PGEE: An R Package for Analysis of Longitudinal Data with
          High-Dimensional Covariates}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {393--402},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-030}
}

Panagiotis Papastamoulis, Magnus Rattray. BayesBinMix: an R Package for Model Based Clustering of Multivariate Binary Data. The R Journal, 9(1):403-420, June 2017.

@Article{RJ-2017-022:2017,
  author       = {Panagiotis Papastamoulis and Magnus Rattray}, 
  title        = {BayesBinMix: an R Package for Model Based Clustering of
          Multivariate Binary Data}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {403--420},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-022}
}

Brandon M. Greenwell. pdp: An R Package for Constructing Partial Dependence Plots. The R Journal, 9(1):421-436, June 2017.

@Article{RJ-2017-016:2017,
  author       = {Brandon M. Greenwell}, 
  title        = {pdp: An R Package for Constructing Partial Dependence Plots}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {421--436},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-016}
}

Michel Lang. checkmate: Fast Argument Checks for Defensive R Programming. The R Journal, 9(1):437-445, June 2017.

@Article{RJ-2017-028:2017,
  author       = {Michel Lang}, 
  title        = {checkmate: Fast Argument Checks for Defensive R Programming}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {437--445},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-028}
}

Ping-Yang Chen, Ching-Chuan Chen, Chun-Hao Yang, Sheng-Mao Chang, Kuo-Jung Lee. milr: Multiple-Instance Logistic Regression with Lasso Penalty. The R Journal, 9(1):446-457, June 2017.

@Article{RJ-2017-013:2017,
  author       = {Ping-Yang Chen and Ching-Chuan Chen and Chun-Hao Yang and
          Sheng-Mao Chang and Kuo-Jung Lee}, 
  title        = {milr: Multiple-Instance Logistic Regression with Lasso
          Penalty}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {446--457},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-013}
}

Axel Gandy, Jan Terje Kvaløy. spcadjust: An R Package for Adjusting for Estimation Error in Control Charts. The R Journal, 9(1):458-476, June 2017.

@Article{RJ-2017-014:2017,
  author       = {Axel Gandy and Jan Terje Kvaløy}, 
  title        = {spcadjust: An R Package for Adjusting for Estimation Error
          in Control Charts}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {458--476},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-014}
}

Rense Nieuwenhuis, Manfred te Grotenhuis, Ben Pelzer. Weighted Effect Coding for Observational Data with wec. The R Journal, 9(1):477-485, June 2017.

@Article{RJ-2017-017:2017,
  author       = {Rense Nieuwenhuis and Manfred te Grotenhuis and Ben Pelzer}, 
  title        = {Weighted Effect Coding for Observational Data with wec}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {477--485},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-017}
}

G. Brooke Anderson, Dirk Eddelbuettel. Hosting Data Packages via drat: A Case Study with Hurricane Exposure Data. The R Journal, 9(1):486-497, June 2017.

@Article{RJ-2017-026:2017,
  author       = {G. Brooke Anderson and Dirk Eddelbuettel}, 
  title        = {Hosting Data Packages via drat: A Case Study with Hurricane
          Exposure Data}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {486--497},
  month        = jun,
  url          = {https://doi.org/10.32614/RJ-2017-026}
}

Torsten Hothorn. R Foundation News. The R Journal, 9(1):498-500, June 2017.

@Article{foundation:2017,
  author       = {Torsten Hothorn}, 
  title        = {R Foundation News}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {498--500},
  month        = jun,
  url          = {http://journal.r-project.org/archive/2017-1/foundation.pdf}
}

Maciej Beręsewicz, Adolfo Alvarez, Przemysław Biecek, Marcin K. Dyderski, Marcin Kosinski, Jakub Nowosad, Kamil Rotter, Alicja Szabelska-Beręsewicz, Marcin Szymkowiak, Łukasz Wawrowski, Joanna Zyprych-Walczak. Conference Report: European R Users Meeting 2016. The R Journal, 9(1):501-504, June 2017.

@Article{erum:2017,
  author       = {Maciej Beręsewicz and Adolfo Alvarez and Przemysław Biecek
          and Marcin K. Dyderski and Marcin Kosinski and Jakub Nowosad
          and Kamil Rotter and Alicja Szabelska-Beręsewicz and Marcin
          Szymkowiak and Łukasz Wawrowski and Joanna Zyprych-Walczak}, 
  title        = {Conference Report: European R Users Meeting 2016}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {501--504},
  month        = jun,
  url          = {http://journal.r-project.org/archive/2017-1/erum.pdf}
}

Kurt Hornik, Uwe Ligges, Achim Zeileis. Changes on CRAN. The R Journal, 9(1):505-507, June 2017.

@Article{cran:2017,
  author       = {Kurt Hornik and Uwe Ligges and Achim Zeileis}, 
  title        = {Changes on CRAN}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {505--507},
  month        = jun,
  url          = {http://journal.r-project.org/archive/2017-1/cran.pdf}
}

Bioconductor Core Team. News from the Bioconductor Project. The R Journal, 9(1):508-508, June 2017.

@Article{bioc:2017,
  author       = {Bioconductor Core Team}, 
  title        = {News from the Bioconductor Project}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {508--508},
  month        = jun,
  url          = {http://journal.r-project.org/archive/2017-1/bioc.pdf}
}

R Core Team. Changes in R. The R Journal, 9(1):509-521, June 2017.

@Article{ch:2017,
  author       = {R Core Team}, 
  title        = {Changes in R}, 
  journal      = {The R Journal},
  year         = 2017,
  volume       = 9,
  number       = 1,
  pages        = {509--521},
  month        = jun,
  url          = {http://journal.r-project.org/archive/2017-1/ch.pdf}
}

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Bibtex for 2017/1