The R Journal, Volume 2/1, June 2010

Complete issue

Complete bibliography

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Table of contents

Editorial 3

Contributed research articles

IsoGene: An R Package for Analyzing Dose-response Studies in Microarray Experiments
Setia Pramana, Dan Lin, Philippe Haldermans, Ziv Shkedy, Tobias Verbeke, Hinrich Göhlmann, An De Bondt, Willem Talloen and Luc Bijnens. 5

MCMC for Generalized Linear Mixed Models with glmmBUGS
Patrick Brown and Lutong Zhou 13

Mapping and Measuring Country Shapes
Nils B. Weidmann and Kristian Skrede Gleditsch 18

tmvtnorm: A Package for the Truncated Multivariate Normal Distribution
Stefan Wilhelm and B. G. Manjunath 25

neuralnet: Training of Neural Networks
Frauke Günther and Stefan Fritsch 30

glmperm: A Permutation of Regressor Residuals Test for Inference in Generalized Linear Models
Wiebke Werft and Axel Benner 39

Online Reproducible Research: An Application to Multivariate Analysis of Bacterial DNA Fingerprint Data
Jean Thioulouse, Claire Valiente-Moro and Lionel Zenner 44

Two-sided Exact Tests and Matching Confidence Intervals for Discrete Data
Michael P. Fay 53

News and notes

A Beginner's Guide to R 59

Conference Review: The 2nd Chinese R Conference 60

Introducing NppToR: R Interaction for Notepad++ 62

Changes in R 2.10.1-2.11.1 64

Changes on CRAN 72

News from the Bioconductor Project 85

R Foundation News 86