Volume 2/1, June 2010

Refereed articles may be downloaded individually using the links below. [Bibliography of refereed articles]

Editorial	3
Contributed Research Articles
IsoGene: An R Package for Analyzing Dose-response Studies in Microarray Experiments Setia Pramana, Dan Lin, Philippe Haldermans, Ziv Shkedy, Tobias Verbeke, Hinrich Göhlmann, An De Bondt, Willem Talloen and Luc Bijnens.	5
MCMC for Generalized Linear Mixed Models with glmmBUGS Patrick Brown and Lutong Zhou	13
Mapping and Measuring Country Shapes Nils B. Weidmann and Kristian Skrede Gleditsch	18
tmvtnorm: A Package for the Truncated Multivariate Normal Distribution Stefan Wilhelm and B. G. Manjunath	25
neuralnet: Training of neural networks Frauke Günther and Stefan Fritsch	30
glmperm: A Permutation of Regressor Residuals Test for Inference in Generalized Linear Models Wiebke Werft and Axel Benner	39
Online Reproducible Research: An Application to Multivariate Analysis of Bacterial DNA Fingerprint Data Jean Thioulouse, Claire Valiente-Moro and Lionel Zenner	44
Two-sided Exact Tests and Matching Confidence Intervals for Discrete Data Michael P. Fay	53
Book Reviews
A Beginner's Guide to R	59
News and Notes
Conference Review: The 2nd Chinese R Conference	60
Introducing NppToR: R Interaction for Notepad++	62
Changes in R 2.10.1-2.11.1	64
Changes on CRAN	72
News from the Bioconductor Project	85
R Foundation News	86

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